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	<h1>bioToolKit <span class="light smaller">
		<br />Bioinformatics Toolkit: R/Python3/shell/js/C/C++
		<br />QQ group: 187923577</span></h1>




	<ul><h2>Tools</h2>
		<h3>Web Tools <span class=light>Powered by JavaScript.</span></h3>
		<li><a href="http://www.biomooc.com/index2.html">Navigator</a> Short cuts for bioinformatics from
			<a href="http://www.biomooc.com">BioMooc</a>.
		</li>
		<li><a href="tool/transphage.html">TransPhage</a> A tool for Translating peptide from phage display[Ph.Dc7c,Ph.D7,Ph.D12].</li>
		<li><a href="tool/revCom.html">revCom</a> A tool for DNA translation, reverse complement.</li>

		<li><a href="JavaScript/mathJax_demo.html">LaTeX Math Preview</a> to preview LaTeX Math expression, based on MathJax.js</li>
		<li><a href="JavaScript/aminoAcid_Formater.html">Amino Acid Formater</a> Format amino acid sequence to patent style</li>

		<li><a class="external_link" href="http://jslecture.biomooc.com/Vue3/000/e02.html">todos</a> VUE3::todos</li>

		<li><a href="JavaScript/colorsViewer.html">colors Viewer</a> View a list of colors in hex format.</li>






		<h3>Local Server <span class=light>Powered by JavaScript.</span></h3>
		<li><a href="JavaScript/code_reader.html">Code Reader</a> to preview R or Python code on server with some highlight by prism.js.</li>
		<li><a href="JavaScript/markdownReader/index_md.html">Markdown Reader</a> to view Markdown files using js only.
			<a class="external_link" href="https://blog.csdn.net/wangjunliang/article/details/144930274" target="_blank">For Rstudio</a>
		</li>
		<li><a href="JavaScript/figureGallery/index_figureGallery.html">Figure Gallery</a> to view figures(jpg/png/...) on server using js and json only.</li>
		<li><a href="JavaScript/TocNavigator_js.html">TocNavigator.js</a> get Top of Contents of a long web page.</li>
		<li><a class="external_link" href="http://jslecture.dawneve.cc/example/s008-carousel/index3.html">carousel</a> Rotations of pictures.</li>


		<h3>Linux Tools</h3>
		<li><a target="_blank" href="http://www.biomooc.com/linux/docker-tutorial.html">Docker images</a> of Rstudio with Seurat, Monocle, ...</li>
		<li><a target="_blank" href="https://github.com/BioMooc/DaisyHttp">DaisyHttp</a> can be used as Data Center Server for Bio Big Files (bam, fasta, ...), with CORS and range header enabled.</li>
	</ul>










	<ul><h2>Note System</h2>
		<li><a target="_blank" href="https://github.com/BioMooc/txtBlog.py">txtBlog.py</a> for reading and organizing txt/Markdown/html files at localhost <span class=light>Powered by Python3.6</span></li>
		<li><a target="_blank" href="https://github.com/DawnEve/StackNote">StackNote</a> for writing and reading memos of papar in Markdown at localhost <span class=light>Powered by JavaScript/Vue3</span></li>
	<!--
		<li><a href="http://agetouch.blog.163.com/">ageTouch</a> My bioinfo blog.</li>
		<li><a href="http://tigomall.blog.163.com/">tigoMall</a> My experi blog.</li>
		-->
	</ul>







	<ul><h2>Dataset</h2>
        <h3>gene list</h3>
		<li><a href="dataset/mito_by_nucleus.gene.txt">mito_by_nucleus.txt</a>: human 细胞核编码的 线粒体 基因，共 1049 个 (PMID 32299104 table S2)</li>
		<li><a href="dataset/TF_list.gene.txt">TF_list.gene.txt</a>: human 转录因子列表(PMID 19274049)</li>
        
		<li><a href="https://www.gsea-msigdb.org/gsea/msigdb/collections.jsp" class="external_link" target="_blank">MSigDB Collections</a> The 25724 gene sets in the Molecular Signatures Database (MSigDB) are divided into 8 major collections, and several sub-collections.</li>
		<hr>
		<li>Impact factor:
			<a href="https://www.fenqubiao.com/" class="external_link" target="_blank">期刊分区表(官网)</a>
		</li>
	</ul>



	<ul><h2>Visualization</h2>
		<p class=light>R, ggplot2; matplotlib, seaborn, js, </p>
		<li><a href="http://www.biomooc.com/R/R-draw-adv-ggplot2.html">learn ggplot2</a></li>
		<br>

		<b>Fancy pictures driven by data: </b><br>
		<ol>
			<li><a href="R_scripts/index.html">专题：ggplot2画paper中常见的图</a></li>
			<li><a href="R_scripts/index_pkgs.html">专题：R包画paper中常见的图</a>: 生存分析、热图</li>
			<li><a href="JavaScript/index.html">专题：JavaScript画paper中常见的图</a></li>
		</ol>
	</ul>


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